High-value option groups

Compact Options

Use this page for a small runtime lookup. For learning, start with Quick Start, Track Construction, and Aesthetics.

Alias	Track class
`annotation`	`BedTrack`
`axis`	`GenomicAxis`
`bed`	`BedTrack`
`bedgraph`	`BigWigTrack`
`bigwig`	`BigWigTrack`
`bigwig_collection`	`BigWigCollection`
`bigwig_diff`	`BigWigDiff`
`bigwig_overlay`	`OverlayTrack`
`bw`	`BigWigTrack`
`capcruncher`	`CapcruncherTrack`
`cooler`	`CoolerTrack`
`cooler_average`	`CoolerAverage`
`gene`	`Genes`
`genes`	`Genes`
`highlight`	`HighlightsFromFile`
`hline`	`HLineTrack`
`links`	`LinksTrack`
`narrowpeak`	`NarrowPeakTrack`
`overlay`	`OverlayTrack`
`quantnado_coverage`	`QuantNadoCoverageTrack`
`quantnado_methylation`	`QuantNadoMethylationTrack`
`quantnado_stranded_coverage`	`QuantNadoStrandedCoverageTrack`
`quantnado_variant`	`QuantNadoVariantTrack`
`scale`	`ScaleBar`

Section	Fields
`track`	`title`, `data`, `height`, `autoscale_group`, `color_group`, `y_min`, `y_max`
`aesthetics`	`color`, `alpha`, `linewidth`, `style`, `fill`, `scatter_point_size`, `show_baseline`, `baseline_color`, `baseline_alpha`, `baseline_linewidth`, `smoothing_window`, `smoothing_method`
`label`	`plot_title`, `plot_scale`, `label_on_track`, `data_range_style`, `label_box_enabled`, `label_box_alpha`, `title_location`, `title_height`, `title_size`, `title_color`, `title_font`, `title_weight`

Section	Fields
`track`	`title`, `data`, `height`, `autoscale_group`, `color_group`
`aesthetics`	`color`, `alpha`, `linewidth`, `edge_color`, `interval_height`, `display`, `max_rows`, `show_labels`, `label_field`, `font_size`, `rect_linewidth`, `draw_edges`
`label`	`plot_title`, `plot_scale`, `label_on_track`, `data_range_style`, `label_box_enabled`, `label_box_alpha`, `title_location`, `title_height`, `title_size`, `title_color`, `title_font`, `title_weight`

Section	Fields
`track`	`title`, `data`, `height`, `autoscale_group`, `color_group`
`aesthetics`	`color`, `alpha`, `linewidth`, `edge_color`, `interval_height`, `display`, `max_rows`, `show_labels`, `label_field`, `font_size`, `rect_linewidth`, `draw_edges`
`label`	`plot_title`, `plot_scale`, `label_on_track`, `data_range_style`, `label_box_enabled`, `label_box_alpha`, `title_location`, `title_height`, `title_size`, `title_color`, `title_font`, `title_weight`

Section	Fields
`track`	`title`, `data`, `height`, `autoscale_group`, `color_group`, `tracks`
`aesthetics`	`colors`, `alpha`, `linewidth`, `show_labels`, `style`, `min_value`, `max_value`
`label`	`plot_title`, `plot_scale`, `label_on_track`, `data_range_style`, `label_box_enabled`, `label_box_alpha`, `title_location`, `title_height`, `title_size`, `title_color`, `title_font`, `title_weight`

Section	Fields
`track`	`title`, `data`, `height`, `autoscale_group`, `color_group`, `genome`, `gene_filter`, `row_scale`, `small_relative`, `gene_count`
`aesthetics`	`color`, `alpha`, `linewidth`, `style`, `fill`, `display`, `minimum_gene_length`, `max_number_of_rows`, `interval_height`, `arrow_size`, `exon_linewidth`, `exon_edge_color`
`label`	`plot_title`, `plot_scale`, `label_on_track`, `data_range_style`, `label_box_enabled`, `label_box_alpha`, `title_location`, `title_height`, `title_size`, `title_color`, `title_font`, `title_weight`

Section	Fields
`track`	`title`, `data`, `height`, `autoscale_group`, `color_group`
`aesthetics`	`color`, `alpha`, `linewidth`, `edge_color`, `cmap`, `max_height`, `color_by_score`, `min_score`, `max_score`, `y_baseline`
`label`	`plot_title`, `plot_scale`, `label_on_track`, `data_range_style`, `label_box_enabled`, `label_box_alpha`, `title_location`, `title_height`, `title_size`, `title_color`, `title_font`, `title_weight`

For full details in your installed version:

from plotnado import GenomicFigure

GenomicFigure.track_options("bigwig")
GenomicFigure.track_options_markdown("bigwig")