Figure Workflows¶
Single region plot¶
gf.plot("chr1:1,000,000-1,100,000")
Extend around region¶
gf.plot("chr1:1,000,000-1,050,000", extend=0.25)
Plot many regions¶
gf.plot_regions(["chr1:1,000,000-1,050,000", "chr1:1,060,000-1,110,000"], ncols=2)
plot_regions also accepts a BED path.
Plot by gene symbol¶
gf.plot_gene("GNAQ", extend=0.5)
Save and load figure configs¶
gf.to_toml("figure.toml")
loaded = GenomicFigure.from_toml("figure.toml")
loaded.save("figure.png", "chr1:1,000,000-1,100,000")
See examples/recipes/02_theme_labels_toml.py for a full round-trip script.