TrackNado 🌪️

TrackNado is a high-level library and CLI tool designed to quickly generate UCSC Genome Browser track hubs from sequencing data.

Features

• Fluent API: Declarative hub construction.
• Auto-Conversion: Implicitly handle BED, GTF, and GFF files.
• Smart Merging: Combine multiple projects with one command.
• Validation: Built-in support for hubCheck.

🚀 Quick Start

Installation

pip install tracknado

Basic Usage

import tracknado as tn

hub = (
    tn.HubBuilder()
    .add_tracks(['sample1.bw', 'sample2.bw'])
    .group_by('method')
    .build(name='my_hub', genome='hg38', outdir='out/')
)
hub.stage_hub()

📖 Documentation Sections

Explore the documentation to get started:

• Getting Started: Installation and quick start guides for CLI and API.
• Metadata Management: Learn how to handle track metadata effectively.
• Organizing Tracks: Deep dive into SuperTracks, CompositeTracks, and overlays.
• API Reference: Full library documentation.
• Examples: Real-world scripts for common workflows.