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Initialisation

After successful installation of SeqNado (Installation).

Initialize the Workflow

Run the following command to initialize the SeqNado workflow in your project directory:

seqnado init

This will create the necessary configuration files and directory structure for your environment.

Additional Initialization Options

For all available flags and details, see the CLI reference: seqnado init.

Example Usage

To initialize SeqNado with preset genomes and verbose logging:

seqnado init --preset --verbose

To perform a dry run and preview the initialization steps:

seqnado init --dry-run

Next Steps

Once SeqNado has been Initialized, continue with:

Genomes